Energy balance and dynamics of kinesin motors / Changbong Hyeon and Jose N. Onuchic -- Mechanochemical coupling in molecular motors : insights from molecular simulations of the myosin motor domain / Haibo Yu. [et al.] -- The chemomechanical coupling mechanisms of kinesin and dynein / Yi Qin Gao and Qiang Shao -- Electron transfer reactions coupled with proton translocation : cytochrome oxidase, proton pumps, and biological energy transduction / Alexei Stuchebrukhov -- Molecular dynamics simulation of proteins : models of anharmonic dynamics / Akinori Kidera. [et al.] -- Energy flow pathways in photoreceptor proteins / Takahisa Yamato -- Nonequilibrium molecular dynamics simulation of photoinduced energy flow in peptides : theory meets experiment / Phuong H. Nguyen, Peter Hamm, and Gerhard Stock --

Energy flow analysis in proteins via ensemble molecular dynamics simulations : time-resolved vibrational analysis and surficial Kirkwood-Buff theory / Masataka Nagaoka, Isseki Yu, and Masayoshi Takayanagi -- Directed energy funneling in proteins : from structure to function / Yong Zhang and John E. Straub -- A minimalist network model for studying biomolecular vibration / Mingyang Lu and Jianpeng Ma -- Heat transport in proteins / David M. Leitner -- Heat transfer in nanostructures / Dvira Segal -- Tubes, funnels, and milestones / Ron Elber, Krzysztof Kuczera, and Gouri S. Jas -- Pathways and rates for structural transformations of peptides and proteins / David J. Wales. [et al.] -- Energy flow and allostery in an ensemble / Vincent J. Hilser and Steven T. Whitten -- Molecular dynamics simulation studies of coupled protein and water dynamics / Douglas J. Tobias, Neelanjana Sengupta, and Mounir Tarek.