chapter Introduction The Everglades, Florida Bay, and Coral Reefs of the Florida Keys: An Ecosystem Sourcebook -- chapter 1 The Past, Present, and Future Hydrology and Ecology of Lake Okeechobee and Its Watersheds -- chapter 2 The Effects of Altered Hydrology on the Ecology of the Everglades -- chapter 3 Effects of Anthropogenic Phosphorus Inputs on the Everglades -- chapter 4 Quantifying the Effects of Low-Level Phosphorus Additions on Unenriched Everglades Wetlands with In Situ Flumes and Phosphorus Dosing -- chapter 5 Ecological Scale and Its Implications for Freshwater Fishes in the Florida Everglades -- chapter 6 Linkages Between the Snail Kite Population and Wetland Dynamics in a Highly Fragmented South Florida Hydroscape -- chapter 7 Multi-Taxon Analysis of the “White Zone,” a Common Ecotonal Feature of South Florida Coastal Wetlands -- chapter 8 Modeling Ecosystem and Population Dynamics on the South Florida Hydroscape -- chapter 9 Maps and GIS Databases for Environmental Studies of the Everglades -- chapter 10 Nitrous Oxide, Methane, and Carbon Dioxide Fluxes from South Florida Habitats During the Transition from Dry to Wet Seasons: Potential Impacts of Everglades Drainage and Flooding on the Atmosphere -- chapter 11 Transport Processes Linking South Florida Coastal Ecosystems -- chapter 12 Regional-Scale and Long-Term Transport Patterns in the Florida Keys -- chapter 13 The Transport of Terrestrial Nutrients to South Florida Coastal Waters -- chapter 14 Linkages Between the South Florida Peninsula and Coastal Zone: A Sediment-Based History of Natural and Anthropogenic Influences -- chapter 15 Rapid Remote Assessments of Salinity and Ocean Color in Florida Bay -- chapter 16 Spatial and Temporal Patterns of Phytoplankton in Florida Bay: Utility of Algal Accessory Pigments and Remote Sensing to Assess Bloom Dynamics -- chapter 17 Modern Diatom Distributions in Florida Bay: A Preliminary Analysis -- chapter 18 Seagrass Distribution in South Florida: A Multi-Agency Coordinated Monitoring Program -- chapter 19 Patterns of Change in the Seagrass-Dominated Florida Bay Hydroscape -- chapter 20 Linkages Between Estuarine and Reef Fish Assemblages: Enhancement by the Presence of Well-Developed Mangrove Shorelines -- chapter 21 Nesting Patterns of Roseate Spoonbills in Florida Bay 1935–1999: Implications of Landscape Scale Anthropogenic Impacts -- chapter 22 A View from the Bridge: External and Internal Forces Affecting the Ambient Water Quality of the Florida Keys National Marine Sanctuary (FKNMS) -- chapter 23 Biotic Phase-Shifts in Florida Bay and Fore Reef Communities of the Florida Keys: Linkages with Historical Freshwater Flows and Nitrogen Loading from Everglades Runoff -- chapter 24 Shoreline Nutrients and Chlorophyll a in the Florida Keys, 1994–1997: A Preliminary Analysis -- chapter 25 Tidal and Meteorological Influences on Shallow Marine Groundwater Flow in the Upper Florida Keys -- chapter 26 The “Ostrich” Component of the Multiple Stressor Model: Undermining South Florida -- chapter 27 Detection of Coral Reef Change by the Florida Keys Coral Reef Monitoring Project -- chapter 28 The Influence of Nearshore Waters on Corals of the Florida Reef Tract -- chapter 29 Differential Coral Recruitment Patterns in the Florida Keys -- chapter 30 Aspergillosis of Sea Fan Corals: Disease Dynamics in the Florida Keys -- chapter 31 Water Quality Concerns in the Florida Keys: Sources, Effects, and Solutions / chapter 32 The Role of the Florida Keys National Marine Sanctuary in the South Florida Ecosystem Restoration Initiative -- chapter 33 The Role of a Nonprofit Organization, Reef Relief, in Protecting Coral Reefs -- chapter 34 Patterns of Coral Reef Development in the Negril Marine Park: Necessity for a Whole Watershed Management Plan -- chapter 35 Community-Based Water Quality and Coral Reef Monitoring in the Negril Marine Park, Jamaica: Land-Based Nutrient Inputs and Their Ecological Consequences.