Principles of Bioreactor Modeling. Modeling Principles -- Basic Bioreactor Concepts -- Biological Kinetics -- Basic Bioreactor Modeling -- Mass Transfer -- Diffusion and Biological Reaction in Immobilized Biocatalyst Systems -- Automatic Bioprocess Control Fundamentals -- Basic Cell and Bioreactor Models -- References Part I and Recommended Textbooks and References for Further Reading -- Dynamic Bioprocess Modeling and Simulation Examples Using the Berkeley Madonna Simulation Language. Dynamic Bioprocess Modeling Examples -- Simulation Examples of Biological Reaction Processes Using Berkeley Madonna -- 10.1 Introductory Simulation Examples -- 10.2 Batch Reactors -- 10.3 Fed-batch Reactors -- 10.4 Continuous Reactors -- 10.5 Oxygen Uptake Systems -- 10.6 Diffusion Systems -- 10.7 Controlled Reactors -- 10.8 Membrane and Cell Retention Reactors -- 10.9 Multi-organism Systems -- 10.10 Structured and Metabolic Network Models -- Using the Berkeley Madonna Language and Accessing the Simulation Examples: A Short Guide.