Part I: Video Bioinformatics: An Introduction -- Live Imaging and Video Bioinformatics -- Video Bioinformatics Methods for Analyzing Cell Dynamics -- Part II: Organismal Dynamics: Analyzing Brain Injury and Disease -- High and Low Level Contextual Modeling for the Detection of Mild-Traumatic Brain Injury -- Automated Identification of Injury Dynamics after Neonatal Hypoxia-Ischemia -- A Real-Time Analysis of Traumatic Brain Injury from T2 Weighted Magnetic Resonance Images using a Symmetry-Based Algorithm -- Visualizing Cortical Tissue Optical Changes during Seizure Activity with Optical Coherence Tomography -- Part III: Dynamics of Stem Cells -- Bio-Inspired Segmentation and Detection Methods for Human Embryonic Stem Cells -- A Video Bioinformatics Method to Quantify Cell Spreading and Its Application to Cells Treated with Rho-associated Protein Kinase and Blebbistatin -- Evaluation of Dynamic Cell Processes and Behavior Using Video Bioinformatics Tools -- Part IV: Dynamic Processes in Plant and Fungal Systems -- Video Bioinformatics: A New Dimension in Quantifying Plant Cell Dynamics -- Understanding Growth of Pollen Tube in Video -- Automatic Image Analysis Pipeline for Studying Growth in Arabidopsis -- Quantitative Analyses using Video Bioinformatics and Image Analysis Tools During Growth and Development in the Multicellular Fungus -- Part V: Dynamics of Intracellular Molecules -- Quantification of the Dynamics of DNA Repair to Ionizing Radiatio n via Colocalization of 53BP1 and H2AX -- A Method to Regulate Cofilin Transport Using Optogenetics and Live Video Analysis -- Part VI: Software, Systems and Databases -- Integrated 5-D Cell Tracking and Linked Analytics in the FARSIGHT Open Source Toolkit -- Video Bioinformatics Databases and Software -- Understanding of the Biological Process of Non-Verbal Communication -- Identification and Retrieval of Moth Images Based on Wing Patterns.