chapter 1 Introduction / chapter 2 Atomistic Models and Force Fields / chapter 3 Dynamics Methods / chapter 4 Conformational Analysis / chapter 5 Treatment of Long-Range Forces and Potential / chapter 6 Internal Coordinate Simulation Method / chapter 7 Implicit Solvent Models Beno�t Roux -- chapter 8 Normal Mode Analysis of Biological Molecules / chapter 9 Free Energy Calculations / chapter 10 Reaction Rates and Transition Pathways / chapter 11 Computer Simulation of Biochemical Reactions with QM�MM Methods / chapter 12 X-Ray and Neutron Scattering as Probes of the Dynamics of Biological Molecules / chapter 13 Applications of Molecular Modeling in NMR Structure Determination / chapter 14 Comparative Protein Structure Modeling / chapter 15 Bayesian Statistics in Molecular and Structural Biology / chapter 16 Computer Aided Drug Design / chapter 17 Protein Folding: Computational Approaches / chapter 18 Simulations of Electron Transfer Proteins / chapter 19 The RISM-SCF/MCSCF Approach for Chemical Processes in Solutions / chapter 20 Nucleic Acid Simulations / chapter 21 Membrane Simulations