Chapter 1. Applications of Circular Dichroism Spectroscopy in Studying Protein Folding, Stability, and Interaction -- Chapter 2. Fluorescence Spectroscopy-based Methods to Study Protein Folding Dynamics -- Chapter 3. Applications of Differential Scanning Calorimetry in Studying Folding and Stability of Proteins -- Chapter 4. Nuclear Magnetic Resonance Spectroscopy to Analyze Protein Folding and Dynamics -- Chapter 5. Molecular Dynamics Simulation Methods to Study Protein Structural Dynamics. Chapter 6. Molecular Dynamics Simulation to Study Protein Conformation and Ligand Interaction -- Chapter 7. Monte Carlo Approaches to Study Protein Conformation Ensembles. Chapter 8. Markov State Models of Molecular Simulations to Study Protein Folding and Dynamics -- Chapter 9. Enhanced Sampling and Free Energy Methods to Study Protein Folding and Dynamics -- Chapter 10. Investigating Protein Unfolding and Stability using Chaotropic Agents and Molecular Dynamics Simulation -- Chapter 11. pH-basedMolecular Dynamics Simulation for Analyzing Protein Structure and Folding -- Chapter 12. Molecular Dynamics Simulation to Study Thermal Unfolding in Proteins -- Chapter 13. Principles, Methods, and Applications of Protein Folding Inside Cells. .