chapter 1 Virtual Screening: Scope and Limitations -- chapter 2 Addressing the Virtual Screening Challenge: The Flex* Approach -- chapter 3 An Analysis of Critical Factors Affecting Docking and Scoring -- chapter 4 Compound Selection for Virtual Screening -- chapter 5 Experimental Identification of Promiscuous, Aggregate-Forming Screening Hits -- chapter 6 Data Mining Approaches for Enhancement of Knowledge-Based Content of De Novo Chemical Libraries -- chapter 7 Pharmacophore-Based Virtual Screening: A Practical Perspective -- chapter 8 Using Pharmacophore Multiplet Fingerprints for Virtual High Throughput Screening -- chapter 9 Potential Functions for Virtual Screening and Ligand Binding Calculations: Some Theoretical Considerations -- chapter 10 Solvation-Based Scoring for High Throughput Docking -- chapter 11 Classification of Ligand–Receptor Complexes Based on Receptor Binding Site Characteristics -- chapter 12 A Practical Guide to DOCK 5 -- chapter 13 Pharmacophore-Based Molecular Docking: A Practical Guide -- chapter 14 Fragment-Based High Throughput Docking -- chapter 15 Protein–Ligand Docking and Virtual Screening with GOLD -- chapter 16 A Brief History of Glide: A New Paradigm for Docking and Scoring in Virtual Screening.