chapter Problem 1 Protein Sequence Alignment -- chapter Problem 2 Predicting Protein Features from the Sequence -- chapter Problem 3 Function Prediction -- chapter Problem 4 Protein Structure Prediction -- chapter Problem 5 Membrane Proteins -- chapter Problem 6 Functional Site Identification -- chapter Problem 7 Protein–Protein Interaction -- chapter Problem 8 Protein–Small Molecule Interaction -- chapter Problem 9 Protein Design -- chapter Problem 10 Protein Engineering -- chapter Conclusions.