chapter 1 Microarray Platforms -- chapter 2 Normalization of Microarray Data / chapter 3 Microarray Quality Control and Assessment / chapter 4 Epistemological Foundations of Statistical Methods for High-Dimensional Biology∗ / chapter 5 The Role of Sample Size on Measures of Uncertainty and Power / chapter 6 Pooling Biological Samples in Microarray Experiments / chapter 7 Designing Microarrays for the Analysis of Gene Expressions / chapter 8 Overview of Standard Clustering Approaches for Gene Microarray Data Analysis / chapter 9 Cluster Stability / chapter 10 Dimensionality Reduction and Discrimination / chapter 11 Modeling Affymetrix Data at the Probe Level / chapter 12 Parametric Linear Models / chapter 13 The Use of Nonparametric Procedures in the Statistical Analysis of Microarray Data / chapter 14 Bayesian Analysis of Microarray Data / chapter 15 False Discovery Rate and Multiple Comparison Procedures / chapter 16 Using Standards to Facilitate Interoperation of Heterogeneous Microarray Databases and Analytic Tools / chapter 17 Postanalysis Interpretation: “What Do I Do with This Gene List?” / chapter 18 Combining High Dimensional Biological Data to Study Complex Diseases and Quantitative Traits